Uhh at what point exactly? From what I recall, the intro for STTR is briefly heard right before the Torture scene. It's the same as the album version, just without the additional chain sound effects. The hologram version starts with a soundscape of military sounds over a differnt orchestral piece, but I don't recall hearing that in the film. The drill you hear in the spider scene is taken from This Is It.
Anything STTR you hear is from Timbaland's 2014 mix, of which the instrumentals were all created new. Any of the mixes released officially by the Estate, be it album or hologram mix, are considered part of MJ's catalogue. Also why the 2014 version of Xscape is used much earlier in the film.